Dr. Jocelyne Vreede

Van 't Hoff Institute for Molecular Sciences
University of Amsterdam
Science Park 904
1098 XH Amsterdam

room: C2.238
phone: (+31) 20 525 6489
j.vreedeuva.nl

Publications

  1. Transition path sampling of protein conformational changes
    J. Juraszek, J. Vreede and P.G. Bolhuis
    Accepted in Chem. Phys. 2011
  2. Proline 68 tunes photochemsitry yield in Photoactive Yellow Protein
    A.B. Rupenyan, J. Vreede, I.H.M. van Stokkum, M. Hospes, J.T.M. Kennis, K.J. Hellingwerf and M.L. Groot
    J. Phys. Chem. B 115 2011 6668
  3. Predicting the reaction coordinates of millisecond light-induced conformational changes in photoactive yellow protein.
    J. Vreede, J. Juraszek and P.G. Bolhuis
    Proc. Natl. Acad. Sci. USA 107 2010, 2397
  4. Common G102S polymorphism in chititriosidase differentially affects activity towards 4-methylumbelliferyl substrates.
    A.P. Bussink, M. Verhoek, J. Vreede, K. Ghauharali-van der Vlugt, W.E. Donker-Koopman, R.R. Sprenger, C.E. Hollak, J.M. Aerts, R.G. Boots
    FEBS J. 276 (2009), 5678
  5. In vivo mutational analysis of YtvA from Bacillus subtilis: mechanism of light activation of the general stress response.
    M. Avila-Perez, J. Vreede, Y. Tang, O. Bende, A. Losi, W. Gartner, K.J. Hellingwerf
    J. Biol. Chem. 284 (2009), 24958
  6. Reordering hydrogen bonds using hamiltonian replica exchange enhances sampling of conformational changes in biomolecular systems.
    J. Vreede, M.G. Wolf, S.W. de Leeuw and P.G. Bolhuis
    J. Phys. Chem. B 113 (2009), 6484
  7. A single histidine residue modulates enzymatic activity in acidic mammalian chitinase.
    A.P Bussink, J. Vreede, J.M. Aerts and R.G. Boot
    FEBS Lett. 582 (2008), 931
  8. Helix formation is a bottleneck in the recovery reaction of Photoactive Yellow Protein.
    J. Vreede, K.J. Hellingwerf, and P.G. Bolhuis
    Proteins 72 (2007), 136
  9. Molecular Dynamics simulations reveal auto-inducer mediated TraR DNA binding through protein backbone fluctuations.
    J. Vreede, K.J. Hellingwerf, and W. Crielaard
    FEBS Letters 582 (2008), 805
  10. Protonation of the chromophore in the photoactive yellow protein.
    E.J.M Leenders, L. Guidoni, U. Rothlisberger, J. Vreede, P.G. Bolhuis, and E.J. Meijer
    J. Phys. Chem. B (2007), in press
  11. Predicting the signaling state of Photoactive Yellow Protein.
    J. Vreede, W. Crielaard, K.J. Hellingwerf, and P.G. Bolhuis
    Biophys J. 88 (2005), 3525
  12. Measuring and Modelling Dynamical Changes in the Structure of Photoactive Yellow Protein.
    J. Vreede, M.A. van der Horst, R. Kort, W. Crielaard, and K.J. Hellingwerf
    Phase Transitions 77 (2004), 3
  13. PAS domains: common structure, common flexibility?
    J. Vreede, M.A. van der Horst, K.J. Hellingwerf, W. Crielaard, and D.M.F. van Aalten
    J. Biol. Chem. 278, (2003), 18434
  14. Investigation of Surfactant Efficiency Using Dissipative Particle Dynamics.
    L. Rekvig, M. Kranenburg, J. Vreede, B. Hafskjold, and B. Smit
    Langmuir 19 (2003), 8195